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  According to his memo, Thomas’s senior colleagues in the embassy knew all about Garro’s claims because he had told them. He wrote them long reports after each of his conversations with her in 1965. He set aside part of Christmas Day that year to write a memo—it was dated December 25—recounting what he had heard that morning from her at a holiday party. He made sure his memos went straight to Winston “Win” Scott, the CIA’s station chief in Mexico. The courtly, Alabama-born Scott, then fifty-six years old, had sources at the highest levels of the Mexican government, including a series of Mexican presidents who sought his protection and whose top aides became some of the CIA’s best-paid informants in the country. Many Mexican officials saw Scott, who took up his post in 1956, as far more powerful than any of the American ambassadors he had worked with. His deputies knew he also wielded extraordinary influence back at CIA headquarters in Langley, Virginia, in part because of his decades-long friendship with James Jesus Angleton, the CIA’s counterintelligence director—the agency’s chief “mole hunter.” Both men had been with the CIA since its founding in 1947.

  In his memo to Rogers, Thomas said that Scott and others in the embassy did not pursue the information tying Oswald to the Cubans. After initial expressions of interest, Scott essentially ignored what Thomas had learned, even when Thomas tried to raise the questions again in 1967, as he prepared to leave Mexico for a new posting in Washington.

  Thomas acknowledged that “even if all the allegations in the attached memo were true, they would not, in themselves, prove that there was a conspiracy to assassinate President Kennedy.” But he concluded his letter to Rogers by warning of the danger to the government if Garro’s allegations, unproven but uninvestigated, became known outside the State Department and the CIA. “If they were ever made public, those who have tried to discredit the Warren Report could have a field day in speculating about their implications,” Thomas wrote. “The credibility of the Warren Report would be damaged all the more if it were learned that these allegations were known and never adequately investigated.”

  * * *

  Thomas’s last day of employment at the State Department was July 31, 1969, only six days after the date on his memo to Secretary Rogers. It is not clear from the department’s records if Thomas was immediately informed about what happened next with his memo, but the department did pass on his information—to the CIA. On August 29, in a letter stamped CONFIDENTIAL, the State Department’s Division of Protective Security wrote to the CIA and asked for an appraisal of Thomas’s material. It provided the agency with Thomas’s memo, along with several supporting documents.

  A little less than three weeks later, the CIA sent back its curt reply. It read, in full: “Subject: Charles William Thomas. Reference is made to your memorandum of 29 August 1969. We have examined the attachments, and see no need for further action. A copy of this reply has been sent to the Federal Bureau of Investigation and the United States Secret Service.” The memo was signed by Angleton, the CIA counterintelligence chief, and one of his deputies, Raymond Rocca. Thomas was notified of the CIA’s rebuff and, as far as he knew, that was where the paper trail stopped; apparently, nothing more was to be done.

  After his suicide two years later, the Washington Post published a 186-word obituary that made only a passing reference to how Thomas had died: “Police said the cause of death was gunshot wounds.” (Actually, his death certificate identified only one gunshot wound—to his right temple.) After pleas from his family, congressional investigators reviewed his personnel files and determined that Thomas had been “selected out” from the State Department in error. A clerical mistake had cost him his career, or so it appeared; an important job performance report endorsing his promotion had been left out of his personnel files for reasons that were never fully explained.

  Congressional investigators later suspected that there had been other factors in the decision to force Thomas out, including his persistent, unwelcome effort to get someone to follow up on Garro’s allegations. “I always thought it was linked, somehow, to his questions about Oswald,” said a former investigator for the House of Representatives. “It was impossible to prove, though. If he was forced out because of Mexico City, it was all done with a wink and a nod.” There were rumors in Mexico that one of Win Scott’s deputies at the embassy there had mounted a whispering campaign intended to damage Thomas’s reputation—for reasons that Thomas’s many Mexican friends could never fathom.

  Former senator Birch Bayh of Indiana, chairman of the Senate Select Committee on Intelligence from 1979 to 1981, helped Thomas’s family obtain some of the pension benefits they were initially denied after his suicide. Bayh said he intervened, at first, because Thomas had such strong family roots in Indiana. In a 2013 interview, he said he remained perplexed by Thomas’s dismissal. “It never made sense,” said Bayh, who insisted that he was never informed of any link between Thomas and the investigation of the Kennedy assassination. The former senator said that he could not necessarily draw a connection between Thomas’s ouster from the department and what he had learned—and tried to expose—in Mexico City. “But something happened to Charles Thomas,” Bayh said. “He was harassed to death by his government.”

  * * *

  Late one afternoon in the spring of 2008, the phone rang at my desk in the Washington bureau of the New York Times. The caller was someone I had never met—a prominent American lawyer who had begun his career almost half a century earlier as a young staff investigator on the Warren Commission. “You ought to tell our story,” he said. “We’re not young, but a lot of us from the commission are still around, and this may be our last chance to explain what really happened.” His call was prompted, he said, by the generous reviews I had received that year after the publication of my first book—a history of the government commission that investigated the September 11, 2001, terrorist attacks. My caller offered to do all he could to help me with a similar history of the Warren Commission, so long as I did not identify him to his former colleagues as the man who had suggested the idea. “I don’t want to take the blame for this when you find out the unflattering stuff,” he said, adding that the backstory of the commission was “the best detective story you’ve never heard.”

  And so began a five-year reporting project to piece together the inside story of the most important, and most misunderstood, homicide investigation of the twentieth century—the Warren Commission’s investigation of the assassination of President Kennedy. Chief Justice Warren and the other six members of the commission died long before I began work on this book—the last surviving member, former president Gerald Ford, died in 2006—but my caller was right that most of the then young lawyers who did the actual detective work in 1964 were still alive. And I’m grateful that almost all of them have been willing to speak with me.

  Sadly, time has begun to catch up with my sources, too. Some of the commission investigators and other key figures who granted me interviews for the book have died, most notably former senator Arlen Specter of Pennsylvania, who had been a junior staff lawyer on the commission. This book is therefore their last testament about the work of the commission and about the Kennedy assassination. I was the last journalist to interview former FBI special agent James Hosty, a central witness before the Warren Commission because he had Lee Harvey Oswald under surveillance in Dallas for months before the assassination. Hosty faced obvious questions about why he and his colleagues at the FBI had not been able to stop Oswald. In interviews shortly before his death in June 2011, Hosty insisted that he became the scapegoat—both within the FBI and for the Warren Commission—for the incompetence and duplicity of others in the government.

  The title of this book is drawn from the first line of the introduction to the commission’s final report: “The assassination of John Fitzgerald Kennedy on November 22, 1963, was a cruel and shocking act of violence directed against a man, a family, a nation, and against all mankind.” But while A Cruel and Shocking Act began as an attempt to write the first c
omprehensive inside history of the Warren Commission, it has become something much larger and, I believe, more important. In many ways, this book is an account of my discovery of how much of the truth about the Kennedy assassination has still not been told, and how much of the evidence about the president’s murder was covered up or destroyed—shredded, incinerated, or erased—before it could reach the commission. Senior officials at both the CIA and the FBI hid information from the panel, apparently in hopes of concealing just how much they had known about Lee Harvey Oswald and the threat that he posed. As this book will reveal for the first time, important witnesses to events surrounding the assassination were ignored or were threatened into silence. The reporting for this book has taken me to places and introduced me to people I would never have imagined would be so important to understanding President Kennedy’s death.

  * * *

  I became a victim of the dual curse faced by anyone who tries to get closer to the truth about the assassination—of too little information and too much. I made the astonishing, nearly simultaneous discovery of how much vital evidence about President Kennedy’s murder has disappeared and also of how much has been preserved. There is now so much material in the public record about the assassination, including literally millions of pages of once-secret government files, that no reporter or scholar can claim to have seen it all. Whole collections of evidence have still not been adequately reviewed by researchers, almost exactly fifty years after the events they describe. I was the first researcher, for example, to be given full access to the papers of Charles Thomas, including the record of his struggle to get colleagues to pay attention to the astonishing story of Oswald and the “twist party” in Mexico City, and I did not see the material until 2013.

  The records of the Warren Commission—its formal name was the President’s Commission on the Assassination of President Kennedy—fill up 363 cubic feet of shelf space in well-guarded, climate-controlled storage rooms at a National Archives facility in College Park, Maryland, just outside Washington, DC. Thousands of the commission’s physical exhibits are there, including Oswald’s 6.5-millimeter Italian-made Mannlicher-Carcano rifle, the murder weapon found on the sixth floor of the Texas School Book Depository, as well as the nearly intact three-centimeter copper-jacketed, lead-core bullet that was discovered near a stretcher at Parkland Memorial Hospital in Dallas on the afternoon of the assassination. The commission’s staff—although significantly, not the commission itself—concluded that the bullet, fired from Oswald’s $21 mail-order rifle, passed through the bodies of both President Kennedy and Texas governor John Connally in a scenario that became known as “the single-bullet theory.”

  The rose-pink suit worn by Jacqueline Kennedy in the motorcade is also stored in the modern, fortresslike complex in suburban Maryland. The suit, an American-made Chanel knockoff that was a favorite of the president’s (Mrs. Kennedy “looks ravishing in it,” he told a friend) is preserved in an acid-free container in a windowless vault. The vault is kept at a temperature of between 65 and 68 degrees Fahrenheit (between 18.3 and 20 degrees Celsius), the humidity set at 40 percent. The filtered air in the vault is changed at least six times every hour in order to help preserve the delicate wool fabric, which remains stained with the president’s blood. The whereabouts of Mrs. Kennedy’s iconic pink pillbox hat is a mystery; it was last known to be in the custody of her former personal secretary. A separate vault, kept at a constant temperature of 25 degrees Fahrenheit (−4 degrees Celsius), is used for the storage and preservation of a small strip of celluloid that is believed, by the National Archives, to be the most watched piece of film in the history of motion pictures. It was on those 486 frames of Kodachrome-brand 8mm color film that a Dallas women’s wear manufacturer, Abraham Zapruder, captured the terrible images of the assassination on his Bell & Howell home-movie camera.

  Much of Warren’s personal paperwork from the commission that bore his name is stored at the Library of Congress, just a few minutes’ walk down First Street from his former chambers at the Supreme Court. Warren, who died in 1974, might be startled to know that millions of Americans know of him principally because of the commission, not because of his history-making sixteen-year tenure as chief justice.

  The decision to preserve the vast library of investigative reports and physical evidence gathered by the Warren Commission, and now retained at the National Archives and the Library of Congress, was meant to be reassuring to the public—proof of the commission’s transparency and of its diligence. At the National Archives alone, there are more than five million pages of documents related to the assassination. But the truth about the Warren Commission, as most serious historians and other scholars will acknowledge, even those who fully support its findings, is that its investigation was flawed from the start. The commission made grievous errors. It failed to pursue important evidence and witnesses because of limitations imposed on the investigation by the man who ran it, Chief Justice Warren. Often, Warren seemed more interested in protecting the legacy of his beloved friend President Kennedy, and of the Kennedy family, than in getting to the full facts about the president’s murder.

  On the subject of the assassination, history will be far kinder to the commission’s surviving staff lawyers, as well as its former in-house historian, who reveal in this book what really happened inside the Warren Commission. Much of this book is their story, told through their eyes. The lawyers, mostly in their twenties and thirties at the time of the investigation, were recruited from prestigious law firms, law schools, and prosecutors’ offices around the country. Most are now at the end of long careers in law or public service. For several, being interviewed for this book was the first time they have talked in this much detail, certainly to any journalist, about the commission’s work. Many have kept their silence for decades, fearful of being dragged into ugly, and often unwinnable, public debates with the armies of conspiracy theorists. Without exception, all of these men—the one woman among the lawyers, Alfredda Scobey, died in 2001—retained pride in their individual work on the commission. Many, however, were outraged to discover how much evidence they were never permitted to see. It is evidence, they know, that is still rewriting the history of the Kennedy assassination.

  President Kennedy’s coffin in the Capitol rotunda, November 25, 1963

  1

  THE HOME OF COMMANDER JAMES HUMES

  BETHESDA, MARYLAND

  SATURDAY, NOVEMBER 23, 1963

  Within hours of the return of the president’s body to Washington, evidence about the assassination began to disappear from the government’s files. Notes taken by military pathologists at the autopsy, as well as the original draft of the autopsy report, were incinerated.

  Navy Commander James Humes, MD, said later he was appalled that his handling of the hospital paperwork on the night of Saturday, November 23, might be portrayed as the first act of a government-wide cover-up. Still, he admitted, he should have known better. “What happened was my decision and mine alone,” he recalled. “Nobody else’s.”

  At about eleven that night, the thirty-eight-year-old pathologist took a seat at a card table in the family room of his home in Bethesda, in the Maryland suburbs of Washington, and prepared to read through his notes from the morgue. He assumed he would be there for hours, writing and editing the final autopsy report. He had lit a fire in the fireplace, which provided some warmth on an early winter night.

  The night before, he had led the three-man team of pathologists who conducted the president’s autopsy at Bethesda Naval Medical Center. There had been no time during the day on Saturday to finish the paperwork, he said. So now he sat alone, hoping to find the energy to complete the report in peace. He needed to present a final copy to his colleagues for their signatures; they were under orders to deliver the report to the White House by Sunday night.

  Humes was exhausted. He had managed a few hours of sleep that afternoon, but he had not slept at all Friday night. “I was in the morgue from 7:30 in the evening until 5:30
in the morning,” he said later. “I never left the room.”

  It was on Friday afternoon, with the terrible reports still pouring in from Dallas, that Humes, Bethesda’s highest-ranking pathologist, learned that he would oversee the postmortem of the president. He was told to expect the arrival of the corpse in a few hours’ time. Jacqueline Kennedy had initially resisted the idea of having an autopsy; the vision of her husband’s body lying on a cold, steel dissecting table seemed one more horror in a day already full of them. “It doesn’t have to be done,” she told the president’s personal physician, Admiral George Burkley, as they flew in Air Force One from Dallas to Washington. She was sitting with the president’s casket in the rear compartment of the plane. Burkley, who had proved himself a loyal and discreet friend to the Kennedy family, gently convinced her that there had to be an autopsy. She had always taken comfort from the fact that he was a fellow Roman Catholic, and an especially devout one, and at this moment she would trust his advice above almost all others’. He reminded her that her husband had been the victim of a crime and that an autopsy was a legal necessity. He offered her the choice of the Walter Reed Army Medical Center in Washington or the navy’s hospital in Bethesda. The two hospitals were only eight miles apart. “Of course, the president was in the navy,” Burkley reminded her.

  “Of course,” she said. “Bethesda.”

  The selection was a decision that even some navy doctors questioned. The veteran army pathologists at Walter Reed had far more experience with tracing bullet wounds than did their counterparts in the navy. (It was a simple fact that soldiers were more likely than sailors to die from gunshots.) Commander J. Thornton Boswell, another Bethesda pathologist, was assigned to assist Humes, and he thought it “foolish” to do the autopsy at the navy hospital given the other resources nearby. He thought the president’s corpse should have been taken to the Armed Forces Institute of Pathology in downtown Washington, a Defense Department research center that handled complex medical-legal autopsies from all branches of the military. Neither Humes nor Boswell had credentials in forensic pathology, the branch of pathology that focuses on violent or unexpected deaths, so a third member was added to the team: Dr. Pierre Finck, a forensic pathologist from the Armed Forces Institute. Finck was a lieutenant colonel in the Army Medical Corps.